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paper mendeley data  (Addgene inc)


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    Addgene inc paper mendeley data
    Paper Mendeley Data, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 20 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/paper+mendeley+data/pGST1-Osh4+(2-434)+(Plasmid+%2317632)/pm39481383-658-1-28
    Average 93 stars, based on 20 article reviews
    paper mendeley data - by Bioz Stars, 2026-10
    93/100 stars

    Images

    Related Articles

    Virus:

    Article Title: Adhesion tunes speed and persistence by coordinating protrusions and extracellular matrix remodeling.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal [EPR638Y] to ROCK1 Abcam Cat# ab134181; RRID: AB_2920582 Rabbit monoclonal to GAPDH Cell Signaling Technologies Cat# 2118; RRID: AB_561053 Mouse monoclonal [12G10] to Integrin beta 1 Abcam Cat# ab30394; RRID: AB_775726 Mousemonoclonal [P5D2] to Integrin beta 1 Millipore Cat# MAB1959; RRID: AB_94462 Bacterial and virus strains DH5a chemically competent cells Thermo Fisher Cat# 18258012 Chemicals, peptides, and recombinant proteins Y27632 Millipore Cat# 509228 DMSO Sigma-Aldrich Cat# D2650 Marimastat Abcam Cat# ab141276 GM6001 Millipore Cat# CC1000 Latrunculin B Tocris Cat# 3974 Collagen I Corning Cat# CB354249 DQ Collagen I Invitrogen Cat# D12060 Critical commercial assays Lipofectamine 3000 Thermo Fisher Cat# L3000008 Deposited data Original western blot images and MATLAB code This paper Mendeley data: https://doi.org/10.17632/ r2sm43trbr.1 Experimental models: Cell lines MDA-MB-231 ATCC Cat# HTB-26 HT1080 ATCC Cat# CCL-121 HFF-1 ATCC Cat# SCRC-1041 Recombinant DNA pLV mCherry Addgene RRID: Addgene_36084 psPAX2 Addgene RRID: Addgene_12260 pMD2.G Addgene RRID: Addgene_12259 pRS shROCK1 Origene Cat# TG309775 Software and algorithms Fiji/ImageJ 2 NIH RRID: SCR_002285 MATLAB R2022a Mathworks, Inc. RRID: SCR_001622 Metamorph Molecular Devices RRID: SCR_002368 NIS-Elements Nikon RRID: SCR_014329 Prism 9 Graphpad RRID: SCR_002798 Imaris Oxford Instruments RRID: SCR_007370 Partial least squares regression analysis This paper Mendeley data: https://doi.org/10.17632/ r2sm43trbr.1 Cell trajectory and random walk analysis Wu et al.39 Code source: https://doi.org/10.1073/ pnas.1318967111 Other Blue fluorescent 1mm polystyrene microsphere Invitrogen Cat# F13080 Developmental Cell 58, 1414–1428.e1–e4, August 7, 2023 e1 ..

    Recombinant:

    Article Title: Adhesion tunes speed and persistence by coordinating protrusions and extracellular matrix remodeling.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal [EPR638Y] to ROCK1 Abcam Cat# ab134181; RRID: AB_2920582 Rabbit monoclonal to GAPDH Cell Signaling Technologies Cat# 2118; RRID: AB_561053 Mouse monoclonal [12G10] to Integrin beta 1 Abcam Cat# ab30394; RRID: AB_775726 Mousemonoclonal [P5D2] to Integrin beta 1 Millipore Cat# MAB1959; RRID: AB_94462 Bacterial and virus strains DH5a chemically competent cells Thermo Fisher Cat# 18258012 Chemicals, peptides, and recombinant proteins Y27632 Millipore Cat# 509228 DMSO Sigma-Aldrich Cat# D2650 Marimastat Abcam Cat# ab141276 GM6001 Millipore Cat# CC1000 Latrunculin B Tocris Cat# 3974 Collagen I Corning Cat# CB354249 DQ Collagen I Invitrogen Cat# D12060 Critical commercial assays Lipofectamine 3000 Thermo Fisher Cat# L3000008 Deposited data Original western blot images and MATLAB code This paper Mendeley data: https://doi.org/10.17632/ r2sm43trbr.1 Experimental models: Cell lines MDA-MB-231 ATCC Cat# HTB-26 HT1080 ATCC Cat# CCL-121 HFF-1 ATCC Cat# SCRC-1041 Recombinant DNA pLV mCherry Addgene RRID: Addgene_36084 psPAX2 Addgene RRID: Addgene_12260 pMD2.G Addgene RRID: Addgene_12259 pRS shROCK1 Origene Cat# TG309775 Software and algorithms Fiji/ImageJ 2 NIH RRID: SCR_002285 MATLAB R2022a Mathworks, Inc. RRID: SCR_001622 Metamorph Molecular Devices RRID: SCR_002368 NIS-Elements Nikon RRID: SCR_014329 Prism 9 Graphpad RRID: SCR_002798 Imaris Oxford Instruments RRID: SCR_007370 Partial least squares regression analysis This paper Mendeley data: https://doi.org/10.17632/ r2sm43trbr.1 Cell trajectory and random walk analysis Wu et al.39 Code source: https://doi.org/10.1073/ pnas.1318967111 Other Blue fluorescent 1mm polystyrene microsphere Invitrogen Cat# F13080 Developmental Cell 58, 1414–1428.e1–e4, August 7, 2023 e1 ..

    Article Title: m 6 Am sequesters PCF11 to suppress premature termination and drive neuroblastoma differentiation.
    Article Snippet: In brief An et al. discover transcriptional terminator PCF11 as a mAm reader and demonstrate that mAm does not regulate mRNA stabilization but sequesters PCF11 to suppress premature termination and promote full-length transcription. mAm is crucial for retinoidinduced neuroblastoma differentiation therapy by driving gene expression networks that suppress neuroblastoma’s tumor-stem-like properties.

    Western Blot:

    Article Title: Adhesion tunes speed and persistence by coordinating protrusions and extracellular matrix remodeling.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal [EPR638Y] to ROCK1 Abcam Cat# ab134181; RRID: AB_2920582 Rabbit monoclonal to GAPDH Cell Signaling Technologies Cat# 2118; RRID: AB_561053 Mouse monoclonal [12G10] to Integrin beta 1 Abcam Cat# ab30394; RRID: AB_775726 Mousemonoclonal [P5D2] to Integrin beta 1 Millipore Cat# MAB1959; RRID: AB_94462 Bacterial and virus strains DH5a chemically competent cells Thermo Fisher Cat# 18258012 Chemicals, peptides, and recombinant proteins Y27632 Millipore Cat# 509228 DMSO Sigma-Aldrich Cat# D2650 Marimastat Abcam Cat# ab141276 GM6001 Millipore Cat# CC1000 Latrunculin B Tocris Cat# 3974 Collagen I Corning Cat# CB354249 DQ Collagen I Invitrogen Cat# D12060 Critical commercial assays Lipofectamine 3000 Thermo Fisher Cat# L3000008 Deposited data Original western blot images and MATLAB code This paper Mendeley data: https://doi.org/10.17632/ r2sm43trbr.1 Experimental models: Cell lines MDA-MB-231 ATCC Cat# HTB-26 HT1080 ATCC Cat# CCL-121 HFF-1 ATCC Cat# SCRC-1041 Recombinant DNA pLV mCherry Addgene RRID: Addgene_36084 psPAX2 Addgene RRID: Addgene_12260 pMD2.G Addgene RRID: Addgene_12259 pRS shROCK1 Origene Cat# TG309775 Software and algorithms Fiji/ImageJ 2 NIH RRID: SCR_002285 MATLAB R2022a Mathworks, Inc. RRID: SCR_001622 Metamorph Molecular Devices RRID: SCR_002368 NIS-Elements Nikon RRID: SCR_014329 Prism 9 Graphpad RRID: SCR_002798 Imaris Oxford Instruments RRID: SCR_007370 Partial least squares regression analysis This paper Mendeley data: https://doi.org/10.17632/ r2sm43trbr.1 Cell trajectory and random walk analysis Wu et al.39 Code source: https://doi.org/10.1073/ pnas.1318967111 Other Blue fluorescent 1mm polystyrene microsphere Invitrogen Cat# F13080 Developmental Cell 58, 1414–1428.e1–e4, August 7, 2023 e1 ..

    Multiple Displacement Amplification:

    Article Title: Adhesion tunes speed and persistence by coordinating protrusions and extracellular matrix remodeling.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal [EPR638Y] to ROCK1 Abcam Cat# ab134181; RRID: AB_2920582 Rabbit monoclonal to GAPDH Cell Signaling Technologies Cat# 2118; RRID: AB_561053 Mouse monoclonal [12G10] to Integrin beta 1 Abcam Cat# ab30394; RRID: AB_775726 Mousemonoclonal [P5D2] to Integrin beta 1 Millipore Cat# MAB1959; RRID: AB_94462 Bacterial and virus strains DH5a chemically competent cells Thermo Fisher Cat# 18258012 Chemicals, peptides, and recombinant proteins Y27632 Millipore Cat# 509228 DMSO Sigma-Aldrich Cat# D2650 Marimastat Abcam Cat# ab141276 GM6001 Millipore Cat# CC1000 Latrunculin B Tocris Cat# 3974 Collagen I Corning Cat# CB354249 DQ Collagen I Invitrogen Cat# D12060 Critical commercial assays Lipofectamine 3000 Thermo Fisher Cat# L3000008 Deposited data Original western blot images and MATLAB code This paper Mendeley data: https://doi.org/10.17632/ r2sm43trbr.1 Experimental models: Cell lines MDA-MB-231 ATCC Cat# HTB-26 HT1080 ATCC Cat# CCL-121 HFF-1 ATCC Cat# SCRC-1041 Recombinant DNA pLV mCherry Addgene RRID: Addgene_36084 psPAX2 Addgene RRID: Addgene_12260 pMD2.G Addgene RRID: Addgene_12259 pRS shROCK1 Origene Cat# TG309775 Software and algorithms Fiji/ImageJ 2 NIH RRID: SCR_002285 MATLAB R2022a Mathworks, Inc. RRID: SCR_001622 Metamorph Molecular Devices RRID: SCR_002368 NIS-Elements Nikon RRID: SCR_014329 Prism 9 Graphpad RRID: SCR_002798 Imaris Oxford Instruments RRID: SCR_007370 Partial least squares regression analysis This paper Mendeley data: https://doi.org/10.17632/ r2sm43trbr.1 Cell trajectory and random walk analysis Wu et al.39 Code source: https://doi.org/10.1073/ pnas.1318967111 Other Blue fluorescent 1mm polystyrene microsphere Invitrogen Cat# F13080 Developmental Cell 58, 1414–1428.e1–e4, August 7, 2023 e1 ..

    Software:

    Article Title: Adhesion tunes speed and persistence by coordinating protrusions and extracellular matrix remodeling.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal [EPR638Y] to ROCK1 Abcam Cat# ab134181; RRID: AB_2920582 Rabbit monoclonal to GAPDH Cell Signaling Technologies Cat# 2118; RRID: AB_561053 Mouse monoclonal [12G10] to Integrin beta 1 Abcam Cat# ab30394; RRID: AB_775726 Mousemonoclonal [P5D2] to Integrin beta 1 Millipore Cat# MAB1959; RRID: AB_94462 Bacterial and virus strains DH5a chemically competent cells Thermo Fisher Cat# 18258012 Chemicals, peptides, and recombinant proteins Y27632 Millipore Cat# 509228 DMSO Sigma-Aldrich Cat# D2650 Marimastat Abcam Cat# ab141276 GM6001 Millipore Cat# CC1000 Latrunculin B Tocris Cat# 3974 Collagen I Corning Cat# CB354249 DQ Collagen I Invitrogen Cat# D12060 Critical commercial assays Lipofectamine 3000 Thermo Fisher Cat# L3000008 Deposited data Original western blot images and MATLAB code This paper Mendeley data: https://doi.org/10.17632/ r2sm43trbr.1 Experimental models: Cell lines MDA-MB-231 ATCC Cat# HTB-26 HT1080 ATCC Cat# CCL-121 HFF-1 ATCC Cat# SCRC-1041 Recombinant DNA pLV mCherry Addgene RRID: Addgene_36084 psPAX2 Addgene RRID: Addgene_12260 pMD2.G Addgene RRID: Addgene_12259 pRS shROCK1 Origene Cat# TG309775 Software and algorithms Fiji/ImageJ 2 NIH RRID: SCR_002285 MATLAB R2022a Mathworks, Inc. RRID: SCR_001622 Metamorph Molecular Devices RRID: SCR_002368 NIS-Elements Nikon RRID: SCR_014329 Prism 9 Graphpad RRID: SCR_002798 Imaris Oxford Instruments RRID: SCR_007370 Partial least squares regression analysis This paper Mendeley data: https://doi.org/10.17632/ r2sm43trbr.1 Cell trajectory and random walk analysis Wu et al.39 Code source: https://doi.org/10.1073/ pnas.1318967111 Other Blue fluorescent 1mm polystyrene microsphere Invitrogen Cat# F13080 Developmental Cell 58, 1414–1428.e1–e4, August 7, 2023 e1 ..

    Article Title: m 6 Am sequesters PCF11 to suppress premature termination and drive neuroblastoma differentiation.
    Article Snippet: In brief An et al. discover transcriptional terminator PCF11 as a mAm reader and demonstrate that mAm does not regulate mRNA stabilization but sequesters PCF11 to suppress premature termination and promote full-length transcription. mAm is crucial for retinoidinduced neuroblastoma differentiation therapy by driving gene expression networks that suppress neuroblastoma’s tumor-stem-like properties.

    Expressing:

    Article Title: m 6 Am sequesters PCF11 to suppress premature termination and drive neuroblastoma differentiation.
    Article Snippet: In brief An et al. discover transcriptional terminator PCF11 as a mAm reader and demonstrate that mAm does not regulate mRNA stabilization but sequesters PCF11 to suppress premature termination and promote full-length transcription. mAm is crucial for retinoidinduced neuroblastoma differentiation therapy by driving gene expression networks that suppress neuroblastoma’s tumor-stem-like properties.

    Luciferase:

    Article Title: m 6 Am sequesters PCF11 to suppress premature termination and drive neuroblastoma differentiation.
    Article Snippet: In brief An et al. discover transcriptional terminator PCF11 as a mAm reader and demonstrate that mAm does not regulate mRNA stabilization but sequesters PCF11 to suppress premature termination and promote full-length transcription. mAm is crucial for retinoidinduced neuroblastoma differentiation therapy by driving gene expression networks that suppress neuroblastoma’s tumor-stem-like properties.

    Plasmid Preparation:

    Article Title: m 6 Am sequesters PCF11 to suppress premature termination and drive neuroblastoma differentiation.
    Article Snippet: In brief An et al. discover transcriptional terminator PCF11 as a mAm reader and demonstrate that mAm does not regulate mRNA stabilization but sequesters PCF11 to suppress premature termination and promote full-length transcription. mAm is crucial for retinoidinduced neuroblastoma differentiation therapy by driving gene expression networks that suppress neuroblastoma’s tumor-stem-like properties.

    other:

    Article Title: Architecture and assembly dynamics of the essential mitochondrial chaperone complex TIM9·10·12.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains SHuffle T7 Competent E. coli New England BioLabs Cat# C3026J BL21(DE3) Chemically Competent Cells Novagen /SigmaAldrich Cat# 69450 Chemicals, peptides, and recombinant proteins Tim9 protein recombinant expression, this study N/A Tim10 protein recombinant expression, this study N/A Tim12 protein recombinant expression, this study N/A 2H, 13C glucose (97% 2H, 99% 13C) Isotec Cat# 552151 D2O, 99.85 % 2H Eurisotop Cat# DLM-4-99.8-PK 15N ammonium chloride (98% 15N) Eurisotop Cat# NLM-467-10 Deposited data Tim9 NMR chemical shift assignment this paper BMRB ID: 50859 Tim9 reduced NMR chemical shift assignment this paper BMRB ID: 50860 Tim10 NMR chemical shift assignment this paper BMRB ID: 50861 Tim10 reduced NMR chemical shift assignment this paper BMRB ID: 50862 Tim12 NMR chemical shift assignment this paper BMRB ID: 50863 Tim12 reduced NMR chemical shift assignment this paper BMRB ID: 50864 TIM91012 NMR chemical shift assignment this paper BMRB ID: 50858 Heteronuclear NOE data. this paper Mendeley Data; https://doi.org/10.17632/ tr332f3g2x.1 SAXS data and MD models this paper SASBDB, sasbdb.org: SASDH28 Recombinant DNA Plasmid: pETDuet TIM910 Weinh€aupl et al., 2018 AddGene, ID 170280 Plasmid: pET28a Tim12 synthetic: GeneCust AddGene, ID 170281 Software and algorithms Gromacs 5.1 and 2018.1 Abraham et al., 2015 https://manual.gromacs.org/documentation/ 2018-current/index.html MODELLER9.18 Webb and Sali, 2016 http://salilab.org/modeller/modeller.html Crysol3 Franke et al., 2017 https://www.embl-hamburg.de/biosaxs/ manuals/crysol3.htm BME Bottaro et al., 2020 https://github.com/KULL-Centre/BME NMRlib Favier and Brutscher, 2019 https://www.ibs.fr/research/scientific-output/ software/pulse-sequence-tools?lang=fr pyFAI Ashiotis et al., 2015 https://pyfai.readthedocs.io/en/v0.19.0/ index.html ATSAS Petoukhov et al., 2012 https://www.embl-hamburg.de/biosaxs/ software.html GNOM Svergun, 1992 https://www.embl-hamburg.de/biosaxs/ gnom.html NMRPipe Delaglio et al., 1995 https://www.ibbr.umd.edu/nmrpipe/ install.html TALOS+ Shen and Bax, 2013 https://www.ibbr.umd.edu/nmrpipe/ install.html CcpNmr Analysis V3 Skinner et al., 2016 https://www.ccpn.ac.uk/ e1 Structure 29, 1065–1073.e1–e4, September 2, 2021



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